JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP44_chr3_113281930_113446493	0/0	t0078	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0079	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0080	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0081	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0082	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0083	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0084	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0085	4672	1	1	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP45_chr1_159867364_159905165	1/1	t0001	189	409	94	74	185	14	40	copy fasta	CFAP45	chr1	159867364	159905165
CFAP45_chr1_159867364_159905165	0/0	t0002	189	1	0	0	1	0	0	copy fasta	CFAP45	chr1	159867364	159905165
CFAP46_chr10_132803392_132947570	0/0	t0001	116	127	39	23	38	6	21	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	1/1	t0002	116	118	19	30	42	6	19	copy fasta	CFAP46	chr10	132803392	132947570
CFAP46_chr10_132803392_132947570	0/0	t0003	116	1	0	1	0	0	0	copy fasta	CFAP46	chr10	132803392	132947570
CFAP47_chrX_35914734_36390317	1/1	t0001	378	210	67	31	79	5	26	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	t0002	378	3	3	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	t0003	378	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	t0004	377	1	1	0	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP47_chrX_35914734_36390317	0/0	t0005	378	1	0	1	0	0	0	copy fasta	CFAP47	chrX	35914734	36390317
CFAP52_chr17_9571642_9648447	0/0	t0001	304	249	80	31	109	7	22	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	1/1	t0002	304	55	3	27	8	5	10	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	t0003	304	7	0	0	7	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP52_chr17_9571642_9648447	0/0	t0004	304	5	5	0	0	0	0	copy fasta	CFAP52	chr17	9571642	9648447
CFAP53_chr18_50222193_50271495	1/1	t0001	280	402	92	74	176	16	42	copy fasta	CFAP53	chr18	50222193	50271495
CFAP54_chr12_96484577_96880555	1/1	t0001	486	261	66	48	106	12	27	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	t0002	486	4	4	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	t0003	486	2	2	0	0	0	0	copy fasta	CFAP54	chr12	96484577	96880555
CFAP54_chr12_96484577_96880555	0/0	t0004	486	1	0	0	0	0	1	copy fasta	CFAP54	chr12	96484577	96880555
CFAP57_chr1_43167330_43259358	1/0	t0001	311	265	74	50	107	4	29	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/1	t0002	311	38	12	12	0	2	11	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	t0003	311	3	2	0	1	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP57_chr1_43167330_43259358	0/0	t0004	311	2	2	0	0	0	0	copy fasta	CFAP57	chr1	43167330	43259358
CFAP58_chr10_104348833_104460102	1/1	t0001	638	268	77	50	100	10	29	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	t0002	638	38	9	0	22	0	7	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	t0003	638	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP58_chr10_104348833_104460102	0/0	t0004	638	1	1	0	0	0	0	copy fasta	CFAP58	chr10	104348833	104460102
CFAP61_chr20_20047532_20365698	0/0	t0001	385	88	17	26	29	2	14	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/1	t0002	385	82	15	28	20	8	10	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	1/0	t0003	385	38	33	4	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	t0004	385	9	2	1	5	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	t0005	385	8	8	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	t0006	385	6	2	1	2	0	1	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	t0007	385	4	4	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP61_chr20_20047532_20365698	0/0	t0008	385	1	1	0	0	0	0	copy fasta	CFAP61	chr20	20047532	20365698
CFAP65_chr2_218997846_219046516	1/1	t0001	169	259	69	53	106	5	24	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	t0002	169	53	11	3	34	1	4	copy fasta	CFAP65	chr2	218997846	219046516
CFAP65_chr2_218997846_219046516	0/0	t0003	169	10	10	0	0	0	0	copy fasta	CFAP65	chr2	218997846	219046516
CFAP68_chr11_111874541_111890975	0/0	t0001	2118	145	22	18	89	1	15	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	1/1	t0002	2116	109	29	25	31	4	18	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0003	2118	74	16	17	30	7	4	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0004	2117	16	8	2	5	0	1	copy fasta	CFAP68	chr11	111874541	111890975