JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP68_chr11_111874541_111890975	0/0	t0005	2119	6	1	2	2	0	1	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0006	2116	6	0	0	6	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0007	2118	5	0	4	1	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0008	2115	4	0	0	4	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0009	2117	4	4	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0010	2119	4	4	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0011	2117	3	0	2	1	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0012	2119	3	1	0	2	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0013	2118	3	1	2	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0014	2116	2	2	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0015	2116	2	0	2	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0016	2118	1	1	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0017	2118	1	1	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0018	2118	1	0	0	1	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0019	2117	1	1	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0020	2116	1	1	0	0	0	0	copy fasta	CFAP68	chr11	111874541	111890975
CFAP68_chr11_111874541_111890975	0/0	t0021	2116	1	0	0	0	0	1	copy fasta	CFAP68	chr11	111874541	111890975
CFAP69_chr7_90240174_90316063	0/1	t0001	1077	167	36	26	79	5	20	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	1/0	t0002	1077	163	41	31	67	6	17	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	t0003	1077	3	3	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	t0004	1077	2	2	0	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	t0005	1077	1	0	0	0	1	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	t0006	1077	1	0	1	0	0	0	copy fasta	CFAP69	chr7	90240174	90316063
CFAP69_chr7_90240174_90316063	0/0	t0007	1077	1	0	0	0	0	1	copy fasta	CFAP69	chr7	90240174	90316063
CFAP70_chr10_73248762_73363864	1/1	t0001	340	206	57	17	110	0	20	copy fasta	CFAP70	chr10	73248762	73363864
CFAP70_chr10_73248762_73363864	0/0	t0002	340	14	13	1	0	0	0	copy fasta	CFAP70	chr10	73248762	73363864
CFAP73_chr12_113144724_113164276	1/1	t0001	722	251	61	40	111	13	24	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0002	722	33	0	0	32	0	1	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0003	722	29	9	1	16	0	3	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0004	722	3	1	1	0	1	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0005	722	3	3	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0006	722	2	2	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0007	722	2	2	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0008	722	1	1	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0009	722	1	1	0	0	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP73_chr12_113144724_113164276	0/0	t0010	722	1	0	0	1	0	0	copy fasta	CFAP73	chr12	113144724	113164276
CFAP74_chr1_1916957_2008786	0/1	t0001	440	212	43	42	85	12	29	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0002	440	58	35	5	12	0	6	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	1/0	t0003	436	2	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0004	440	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0005	440	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0006	440	1	0	0	0	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0007	440	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0008	440	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	t0009	440	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP77_chr9_132405211_132578319	0/0	t0001	871	233	52	49	102	9	21	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	1/1	t0002	871	73	28	14	12	7	10	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0003	871	5	5	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0004	871	3	0	0	3	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0005	871	2	2	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319