JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP77_chr9_132405211_132578319	0/0	t0006	871	1	0	0	1	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0007	871	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0008	871	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0009	871	1	0	0	0	0	1	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0010	871	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	t0011	871	1	0	1	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP90_chr5_7825378_7856133	0/1	t0001	1585	165	43	39	58	8	16	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0002	1585	136	8	14	94	4	16	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0003	1585	25	0	0	25	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0004	1585	23	5	9	0	3	6	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0005	1585	15	12	3	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0006	1585	12	11	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	1/0	t0007	1585	8	0	0	7	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0008	1585	6	5	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0009	1585	6	0	0	6	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0010	1585	3	3	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0011	1585	3	2	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0012	1585	3	3	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0013	1585	2	0	2	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0014	1585	2	0	0	2	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0015	1585	2	0	0	2	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0016	1585	2	2	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0017	1585	2	0	0	0	1	1	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0018	1585	1	1	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0019	1585	1	0	0	1	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0020	1585	1	1	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0021	1585	1	0	0	1	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	t0022	1585	1	0	0	0	0	1	copy fasta	CFAP90	chr5	7825378	7856133
CFAP91_chr3_119698022_119772102	1/1	t0001	2129	211	24	32	118	9	26	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0002	2129	57	1	14	34	2	6	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0003	2129	21	5	6	8	2	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0004	2136	17	15	2	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0005	2129	16	14	2	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0006	2129	8	0	0	7	1	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0007	2129	8	8	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0008	2129	7	5	0	0	0	2	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0009	2129	4	0	0	4	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0010	2129	4	4	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0011	2125	3	0	3	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0012	2129	3	0	2	0	0	1	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0013	2129	2	1	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0014	2129	2	2	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0015	2129	2	1	0	0	0	1	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0016	2129	2	0	0	0	0	2	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0017	2129	2	2	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0018	2129	2	2	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0019	2129	1	0	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0020	2129	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0021	2129	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0022	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102