JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP91_chr3_119698022_119772102	0/0	t0023	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0024	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0025	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0026	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0027	2129	1	0	0	0	0	1	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0028	2129	1	0	0	0	0	1	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0029	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0030	2129	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0031	2136	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0032	2129	1	0	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	t0033	2129	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP92_chr3_128904873_128999076	1/1	t0001	556	295	62	64	120	15	32	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0002	556	30	16	0	7	0	7	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0003	556	7	6	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0004	553	5	0	4	0	1	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0005	556	2	2	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0006	556	1	0	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0007	556	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	t0008	556	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP95_chr9_69815817_69911227	1/1	t0001	155	377	90	66	161	16	42	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	t0002	155	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	t0003	155	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	t0004	155	1	0	0	1	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP97D1_chr17_43775435_43792620	1/1	t0001	3267	215	34	46	97	9	27	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0002	3269	41	6	16	15	0	4	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0003	3278	35	3	4	23	0	5	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0004	3261	12	9	0	3	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0005	3268	9	2	1	6	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0006	3270	8	1	1	5	0	1	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0007	3267	7	1	6	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0008	3262	5	5	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0009	3263	5	5	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0010	3263	5	5	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0011	3281	5	0	3	1	1	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0012	3294	5	4	1	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0013	3267	4	0	0	4	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0014	3266	3	0	3	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0015	3257	3	3	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0016	3294	3	3	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0017	3284	2	0	0	0	0	2	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0018	3278	2	0	0	1	0	1	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0019	3267	2	0	0	0	0	2	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0020	3267	2	0	0	2	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0021	3297	2	2	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0022	3291	2	1	1	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0023	3262	1	1	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0024	3260	1	1	0	0	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0025	3278	1	0	0	0	0	1	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0026	3278	1	0	0	1	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	t0027	3278	1	0	0	0	0	1	copy fasta	CFAP97D1	chr17	43775435	43792620