JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP97_chr4_185154665_185209000	0/0	t0018	3253	1	0	0	1	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0019	3253	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0020	3252	1	0	0	1	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0021	3252	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0022	3252	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0023	3252	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0024	3252	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0025	3252	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	t0026	3252	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP99_chr4_2413955_2468002	1/1	t0001	233	334	81	59	138	14	40	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	t0002	233	12	11	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	t0003	233	2	2	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	t0004	233	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	t0005	233	1	0	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFB_chr6_31941095_31957084	0/1	t0001	182	416	94	77	185	17	42	copy fasta	CFB	chr6	31941095	31957084
CFB_chr6_31941095_31957084	0/0	t0002	182	15	0	5	7	1	2	copy fasta	CFB	chr6	31941095	31957084
CFC1B_chr2_130516222_130533603	0/0	t0001	972	4	2	2	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	t0002	972	3	3	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	t0003	972	2	2	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	t0004	972	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	t0005	972	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1B_chr2_130516222_130533603	0/0	t0006	972	1	1	0	0	0	0	copy fasta	CFC1B	chr2	130516222	130533603
CFC1_chr2_130587165_130604575	0/0	t0001	1001	221	23	40	123	9	26	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0002	1001	11	4	5	1	1	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0003	1001	2	2	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0004	1001	2	0	0	2	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0005	1001	2	1	1	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0006	1001	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0007	1001	1	1	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0008	1001	1	1	0	0	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFC1_chr2_130587165_130604575	0/0	t0009	1001	1	0	0	1	0	0	copy fasta	CFC1	chr2	130587165	130604575
CFDP1_chr16_75288710_75438503	1/1	t0001	394	267	81	38	106	16	24	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0002	394	36	11	6	9	2	8	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0003	394	4	0	2	0	0	2	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0004	394	2	0	2	0	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0005	394	1	1	0	0	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0006	394	1	0	0	1	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0007	394	1	0	0	1	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0008	394	1	1	0	0	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFDP1_chr16_75288710_75438503	0/0	t0009	394	1	0	0	1	0	0	copy fasta	CFDP1	chr16	75288710	75438503
CFD_chr19_854664_868641	0/0	t0001	430	139	38	36	41	7	17	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0002	430	76	7	6	54	0	9	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0003	429	19	4	2	4	0	9	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0004	430	16	0	0	16	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0005	429	8	0	3	4	0	1	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0006	431	6	2	2	0	0	2	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0007	430	6	6	0	0	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0008	430	3	0	0	3	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0009	429	3	2	1	0	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/1	t0010	431	3	1	1	0	0	0	copy fasta	CFD	chr19	854664	868641