JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFD_chr19_854664_868641	0/0	t0011	429	3	1	0	2	0	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0012	429	2	0	1	0	1	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0013	429	1	0	0	0	1	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0014	430	1	0	0	0	1	0	copy fasta	CFD	chr19	854664	868641
CFD_chr19_854664_868641	0/0	t0015	430	1	1	0	0	0	0	copy fasta	CFD	chr19	854664	868641
CFHR1_chr1_196814731_196837189	1/0	t0001	305	137	14	22	85	4	11	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	t0002	305	135	10	26	91	6	2	copy fasta	CFHR1	chr1	196814731	196837189
CFHR1_chr1_196814731_196837189	0/0	t0003	305	3	0	2	0	0	1	copy fasta	CFHR1	chr1	196814731	196837189
CFHR2_chr1_196938738_196964622	1/1	t0001	686	328	78	64	130	18	36	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0002	686	31	0	3	26	0	2	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0003	686	4	4	0	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0004	686	3	3	0	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0005	686	1	0	1	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0006	686	1	0	0	1	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0007	686	1	1	0	0	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR2_chr1_196938738_196964622	0/0	t0008	686	1	0	0	1	0	0	copy fasta	CFHR2	chr1	196938738	196964622
CFHR3_chr1_196769840_196800407	1/0	t0001	1942	118	5	35	64	7	6	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0002	1942	105	1	8	88	2	6	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0003	1942	9	9	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0004	1942	9	0	2	6	1	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0005	1951	5	0	0	5	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0006	1942	3	0	0	3	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0007	1943	2	2	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0008	1942	1	0	1	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0009	1942	1	1	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0010	1942	1	1	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0011	1942	1	0	1	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0012	1942	1	0	0	1	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0013	1942	1	0	1	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0014	1942	1	0	0	1	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0015	1942	1	0	1	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0016	1942	1	1	0	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR3_chr1_196769840_196800407	0/0	t0017	1942	1	0	1	0	0	0	copy fasta	CFHR3	chr1	196769840	196800407
CFHR4_chr1_196883052_196923633	1/1	t0001	327	345	77	62	152	12	40	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	t0002	327	3	3	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR4_chr1_196883052_196923633	0/0	t0003	327	2	2	0	0	0	0	copy fasta	CFHR4	chr1	196883052	196923633
CFHR5_chr1_196972556_197014678	1/0	t0001	1105	200	30	39	105	6	19	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0002	1105	93	14	18	39	6	16	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/1	t0003	1105	50	38	5	0	1	5	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0004	1105	5	0	0	5	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0005	1105	2	2	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0006	1105	2	0	0	0	0	2	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0007	1105	1	1	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0008	1105	1	0	0	0	1	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0009	1105	1	0	0	1	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFHR5_chr1_196972556_197014678	0/0	t0010	1105	1	1	0	0	0	0	copy fasta	CFHR5	chr1	196972556	197014678
CFH_chr1_196647043_196752504	1/1	t0001	267	283	58	64	118	10	31	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	t0002	267	21	19	2	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	t0003	267	2	2	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFH_chr1_196647043_196752504	0/0	t0004	267	1	0	0	0	0	1	copy fasta	CFH	chr1	196647043	196752504