JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFH_chr1_196647043_196752504	0/0	t0005	267	1	1	0	0	0	0	copy fasta	CFH	chr1	196647043	196752504
CFI_chr4_109735695_109806999	0/1	t0001	227	330	73	64	154	14	24	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	1/0	t0002	227	13	11	1	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	t0003	227	6	6	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	t0004	227	3	0	3	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFI_chr4_109735695_109806999	0/0	t0005	227	2	2	0	0	0	0	copy fasta	CFI	chr4	109735695	109806999
CFL1_chr11_65849673_65863180	1/1	t0001	745	363	65	63	180	12	41	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	t0002	745	13	12	1	0	0	0	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	t0003	743	11	8	3	0	0	0	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	t0004	746	6	5	1	0	0	0	copy fasta	CFL1	chr11	65849673	65863180
CFL1_chr11_65849673_65863180	0/0	t0005	745	1	0	0	0	0	1	copy fasta	CFL1	chr11	65849673	65863180
CFL2_chr14_34704113_34719593	1/0	t0001	3806	106	15	14	62	3	11	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0002	3808	55	9	15	15	8	8	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0003	3809	51	4	1	36	1	9	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0004	3807	31	0	0	27	0	4	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0005	3810	27	14	6	3	0	4	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0006	3809	22	2	4	13	3	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0007	3807	21	1	16	1	0	3	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0008	3809	10	2	4	3	0	1	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0009	3806	9	0	0	9	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0010	3810	9	9	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0011	3809	9	6	3	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0012	3808	6	2	0	1	0	3	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0013	3810	6	0	2	4	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0014	3808	6	6	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0015	3807	5	0	4	0	0	1	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0016	3810	3	1	1	0	1	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0017	3810	3	3	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0018	3810	3	0	0	3	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0019	3807	3	3	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0020	3811	3	2	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0021	3808	3	3	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0022	3808	2	0	2	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0023	3808	2	0	0	1	1	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0024	3806	2	0	0	0	0	2	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0025	3804	2	2	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0026	3809	2	2	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0027	3811	2	2	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0028	3809	2	0	0	0	0	2	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0029	3808	1	0	0	0	0	1	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0030	3806	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0031	3805	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0032	3807	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0033	3808	1	0	1	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0034	3806	1	0	0	0	0	1	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0035	3808	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0036	3811	1	0	1	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0037	3804	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0038	3809	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0039	3810	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593