Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADARB1_chr21_45069580_45231560	0/0	t0105	5920	1	0	1	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0106	5920	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0107	5874	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0108	5875	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0109	5878	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0110	5914	1	0	1	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0111	5884	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0112	5968	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0113	5926	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0114	5926	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0115	5637	1	0	0	0	0	1	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0116	5847	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0117	5884	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0118	5758	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0119	5932	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0120	5770	1	0	0	0	0	1	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0121	5853	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0122	5853	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0123	5935	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0124	5859	1	0	0	0	0	1	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0125	5941	1	0	0	0	0	1	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0126	5896	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0127	5877	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0128	5959	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB2_chr10_1172313_1742525	0/0	t0001	6304	6	6	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0002	6269	6	1	0	1	1	3	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0003	6304	6	0	1	5	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0004	6269	6	0	0	4	0	2	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0005	6269	5	4	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0006	6269	5	0	2	3	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0007	6269	4	0	0	4	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0008	6269	4	2	0	1	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0009	6304	3	1	0	0	0	2	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0010	6304	2	0	1	0	1	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0011	6304	2	0	1	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0012	6304	2	2	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0013	6263	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0014	6304	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0015	6304	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0016	6269	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0017	6307	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0018	6304	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0019	6259	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0020	6256	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0021	6256	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0022	6255	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0023	6256	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0024	6306	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0025	6258	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0026	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525