JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFL2_chr14_34704113_34719593	0/0	t0040	3804	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0041	3810	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0042	3806	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0043	3811	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0044	3833	1	0	0	1	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0045	3811	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0046	3811	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0047	3809	1	0	0	0	1	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0048	3809	1	0	1	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0049	3805	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0050	3808	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0051	3811	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0052	3811	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0053	3810	1	1	0	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFL2_chr14_34704113_34719593	0/0	t0054	3809	1	0	1	0	0	0	copy fasta	CFL2	chr14	34704113	34719593
CFLAR_chr2_201111164_201181687	0/0	t0001	13165	22	2	10	6	1	3	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0002	13168	8	0	2	3	0	3	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0003	13174	7	1	1	3	1	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0004	13168	5	2	2	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0005	13164	5	0	2	1	0	2	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0006	13166	5	2	0	3	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0007	13184	5	5	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0008	13184	5	1	2	0	2	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0009	13193	5	5	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0010	13175	4	0	2	1	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0011	13183	4	4	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0012	13184	4	0	3	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0013	13183	4	4	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0014	13178	3	0	1	0	1	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0015	13176	3	0	1	2	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0016	13178	3	0	0	3	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0017	13172	3	3	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0018	13169	3	1	1	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0019	13161	3	0	0	3	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0020	13157	3	3	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0021	13176	2	0	1	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0022	13126	2	0	2	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0023	13127	2	0	0	0	2	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0024	13174	2	0	0	2	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0025	13167	2	0	0	1	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0026	13166	2	0	2	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0027	13167	2	0	1	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0028	13165	2	2	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0029	13165	2	2	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0030	13162	2	0	0	2	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0031	13184	2	0	2	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0032	13191	2	2	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0033	13194	2	2	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0034	13188	2	2	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0035	13183	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687