JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFLAR_chr2_201111164_201181687	0/0	t0036	13149	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0037	13150	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0038	13138	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0039	13145	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0040	13150	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0041	13188	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0042	13189	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0043	13196	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0044	13190	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0045	13186	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0046	13187	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0047	13178	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0048	13175	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0049	13186	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0050	13177	1	0	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0051	13179	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0052	13127	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/1	t0053	13174	1	0	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0054	13174	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0055	13175	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0056	13174	1	0	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0057	13175	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0058	13174	1	0	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0059	13177	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0060	13149	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0061	13211	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0062	13209	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0063	13174	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0064	13192	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0065	13173	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0066	13172	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0067	13173	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0068	13170	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0069	13171	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0070	13200	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0071	13171	1	0	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	1/0	t0072	13170	1	0	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0073	13170	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0074	13169	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0075	13189	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0076	13167	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0077	13168	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0078	13186	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0079	13188	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0080	13167	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0081	13167	1	0	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0082	13167	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0083	13168	1	0	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0084	13168	1	0	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0085	13168	1	0	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687