JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CFLAR_chr2_201111164_201181687	0/0	t0086	13168	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0087	13166	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0088	13162	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0089	13166	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0090	13166	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0091	13166	1	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0092	13164	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0093	13164	1	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0094	13165	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0095	13166	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0096	13164	1	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0097	13183	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0098	13184	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0099	13164	1	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0100	13165	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0101	13166	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0102	13165	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0103	13166	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0104	13165	1	0	0	0	1	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0105	13162	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0106	13162	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0107	13161	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0108	13162	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0109	13158	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0110	13159	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0111	13156	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0112	13149	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0113	13175	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0114	13191	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0115	13186	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0116	13187	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0117	13187	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0118	13191	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0119	13187	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0120	13190	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0121	13186	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0122	13188	1	0	0	1	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0123	13185	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0124	13183	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0125	13183	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0126	13184	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0127	13183	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0128	13178	1	0	1	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0129	13169	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0130	13191	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0131	13196	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0132	13144	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0133	13163	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0134	13188	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFLAR_chr2_201111164_201181687	0/0	t0135	13165	1	1	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687