JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFLAR_chr2_201111164_201181687	0/0	t0136	13195	1	1	0	0	0	0	copy fasta	CFLAR	chr2	201111164	201181687
CFP_chrX_47618282_47634930	1/1	t0001	1080	289	76	59	115	10	27	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	t0002	1080	6	0	4	0	1	1	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	t0003	1080	5	0	0	5	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	t0004	1080	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	t0005	1079	1	0	0	1	0	0	copy fasta	CFP	chrX	47618282	47634930
CFP_chrX_47618282_47634930	0/0	t0006	1080	1	1	0	0	0	0	copy fasta	CFP	chrX	47618282	47634930
CFTR_chr7_117475025_117673665	1/1	t0001	1628	72	8	11	37	6	8	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0002	1627	67	28	8	23	3	5	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0003	1627	38	19	10	2	1	6	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0004	1627	9	9	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0005	1627	6	0	1	5	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0006	1627	5	3	1	0	0	1	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0007	1628	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0008	1628	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0009	1627	1	0	0	1	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0010	1627	1	0	1	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CFTR_chr7_117475025_117673665	0/0	t0011	1627	1	1	0	0	0	0	copy fasta	CFTR	chr7	117475025	117673665
CGAS_chr6_73418711_73457297	0/0	t0001	1633	118	15	17	66	8	12	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0002	1633	35	0	12	23	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0003	1632	26	8	4	14	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0004	1632	24	9	0	11	0	4	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0005	1633	19	2	6	3	3	5	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0006	1633	19	7	1	9	0	2	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0007	1632	17	1	4	11	1	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0008	1633	17	7	4	3	0	3	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0009	1633	13	13	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0010	1631	8	0	0	8	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0011	1633	8	0	8	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	1/0	t0012	1633	6	1	0	3	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0013	1632	5	1	3	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0014	1633	5	1	2	0	2	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0015	1632	4	3	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0016	1632	4	2	0	0	0	2	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0017	1633	4	2	1	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0018	1634	3	0	2	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0019	1629	3	3	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0020	1632	3	0	0	2	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0021	1633	3	0	0	3	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0022	1634	3	0	1	1	1	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0023	1631	2	0	0	2	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0024	1632	2	0	1	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0025	1632	2	0	1	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0026	1633	2	0	0	2	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0027	1633	2	2	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0028	1633	2	1	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0029	1633	2	2	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0030	1633	2	0	0	2	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0031	1629	2	0	0	2	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0032	1629	2	0	0	2	0	0	copy fasta	CGAS	chr6	73418711	73457297