JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGAS_chr6_73418711_73457297	0/0	t0033	1632	1	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0034	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0035	1632	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0036	1632	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0037	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0038	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0039	1632	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0040	1632	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0041	1628	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0042	1631	1	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0043	1631	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0044	1632	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0045	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0046	1631	1	0	0	0	1	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0047	1632	1	0	0	0	1	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0048	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0049	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0050	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0051	1633	1	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0052	1633	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0053	1632	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0054	1632	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0055	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0056	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0057	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0058	1633	1	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0059	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0060	1629	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0061	1632	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/1	t0062	1633	1	0	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0063	1633	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0064	1632	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0065	1633	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0066	1633	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0067	1633	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0068	1633	1	0	0	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0069	1633	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0070	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0071	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0072	1633	1	0	0	0	1	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0073	1634	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0074	1633	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	t0075	1633	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGA_chr6_87080498_87100106	0/0	t0001	360	213	44	41	101	6	21	copy fasta	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	1/0	t0002	360	139	21	17	77	9	14	copy fasta	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/1	t0003	360	65	27	11	18	3	5	copy fasta	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	t0004	360	1	0	1	0	0	0	copy fasta	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	t0005	360	1	0	0	1	0	0	copy fasta	CGA	chr6	87080498	87100106
CGA_chr6_87080498_87100106	0/0	t0006	360	1	0	0	1	0	0	copy fasta	CGA	chr6	87080498	87100106
CGB1_chr19_49030569_49041895	0/1	t0001	226	183	64	57	22	8	31	copy fasta	CGB1	chr19	49030569	49041895