JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGB1_chr19_49030569_49041895	1/0	t0002	226	144	11	19	96	4	13	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	t0003	226	26	0	3	21	0	2	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	t0004	226	14	12	2	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	t0005	226	3	0	0	3	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	t0006	231	3	0	0	3	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	t0007	226	2	1	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	t0008	226	1	0	0	1	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB2_chr19_49026890_49038238	0/0	t0001	224	356	77	74	143	14	48	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0002	224	6	6	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0003	224	3	2	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0004	224	2	1	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0005	224	2	1	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0006	224	2	0	2	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0007	225	1	0	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	t0008	224	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB3_chr19_49017869_49029333	0/0	t0001	380	157	30	41	57	9	20	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	1/0	t0002	380	149	8	24	91	3	22	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0003	380	32	27	5	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0004	380	14	13	0	0	0	1	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0005	380	6	1	2	0	0	3	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0006	380	4	0	3	0	1	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0007	380	3	3	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0008	380	3	3	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0009	380	3	0	2	0	1	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0010	380	2	2	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0011	380	2	2	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0012	380	2	0	1	0	0	1	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0013	380	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0014	380	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0015	380	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0016	380	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0017	380	1	0	0	0	0	1	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0018	380	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0019	380	1	0	0	1	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0020	380	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0021	380	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0022	380	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0023	380	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0024	380	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0025	380	1	0	0	1	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	t0026	127	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB5_chr19_49038848_49050311	1/1	t0001	380	262	55	40	129	10	26	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0002	380	46	7	19	7	4	9	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0003	380	42	16	7	11	0	8	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0004	380	10	4	0	6	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0005	380	5	5	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0006	380	4	4	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0007	380	2	0	0	2	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0008	380	2	1	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0009	380	2	1	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311