JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGB5_chr19_49038848_49050311	0/0	t0010	380	2	1	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0011	380	1	0	0	1	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0012	380	1	0	0	0	0	1	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0013	380	1	0	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0014	380	1	0	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	t0015	380	1	0	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB7_chr19_49049274_49062749	1/0	t0001	1654	196	28	36	111	4	16	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0002	1654	56	16	11	25	0	4	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/1	t0003	1653	44	1	9	25	3	5	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0004	1654	39	10	7	5	2	15	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0005	1654	15	0	0	15	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0006	1654	11	9	2	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0007	1654	7	5	2	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0008	1654	4	0	2	0	0	2	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0009	1654	4	3	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0010	1653	4	0	0	4	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0011	1654	3	2	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0012	1654	2	1	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0013	1654	2	0	0	0	0	2	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0014	1654	2	2	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0015	1654	2	0	1	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0016	1654	2	0	1	0	1	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0017	1654	2	0	0	2	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0018	1654	2	2	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0019	1654	2	2	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0020	1654	2	1	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0021	1654	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0022	1654	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0023	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0024	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0025	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0026	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0027	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0028	1654	1	0	1	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0029	1654	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0030	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0031	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0032	1654	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0033	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0034	1654	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0035	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0036	1654	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0037	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0038	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0039	1654	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0040	1653	1	0	0	0	1	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	t0041	1654	1	0	0	0	1	0	copy fasta	CGB7	chr19	49049274	49062749
CGB8_chr19_49042638_49054111	1/0	t0001	390	217	33	43	108	6	26	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/1	t0002	390	131	33	24	52	7	14	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0003	390	13	12	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111