JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGB8_chr19_49042638_49054111	0/0	t0004	390	12	1	8	0	1	2	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0005	390	5	5	0	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0006	390	5	4	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0007	390	4	4	0	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0008	390	2	2	0	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0009	390	1	0	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0010	390	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0011	390	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0012	390	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	t0013	390	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGGBP1_chr3_88046950_88064005	0/1	t0001	4043	183	22	45	88	6	21	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	1/0	t0002	4045	48	19	3	22	0	3	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0003	4043	37	10	8	13	2	4	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0004	4043	17	17	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0005	4040	10	0	3	4	1	2	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0006	4040	7	0	4	2	0	1	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0007	4040	7	3	2	0	1	1	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0008	4040	5	5	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0009	4043	4	0	0	4	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0010	4043	3	3	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0011	4043	3	2	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0012	4043	3	0	3	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0013	4043	2	1	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0014	4045	2	1	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0015	4043	2	0	0	2	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0016	4043	2	0	0	2	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0017	4043	2	0	0	2	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0018	4043	2	0	2	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0019	4043	2	0	0	2	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0020	4040	1	0	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0021	4040	1	1	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0022	4040	1	1	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0023	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0024	4045	1	1	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0025	4045	1	1	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0026	4045	1	1	0	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0027	4045	1	0	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0028	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0029	4043	1	0	0	0	0	1	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0030	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0031	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0032	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0033	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0034	4043	1	0	0	1	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0035	4043	1	0	1	0	0	0	copy fasta	CGGBP1	chr3	88046950	88064005
CGGBP1_chr3_88046950_88064005	0/0	t0036	4043	1	0	0	0	0	1	copy fasta	CGGBP1	chr3	88046950	88064005
CGNL1_chr15_57371505_57555717	1/0	t0001	3306	66	13	13	30	1	8	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0002	3306	66	4	23	22	6	11	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/1	t0003	3308	39	1	13	16	2	6	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0004	3306	33	11	5	12	1	4	copy fasta	CGNL1	chr15	57371505	57555717