JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGNL1_chr15_57371505_57555717	0/0	t0005	3305	12	11	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0006	3302	10	6	0	0	0	4	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0007	3305	6	6	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0008	3306	6	6	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0009	3302	4	4	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0010	3306	4	4	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0011	3306	4	0	2	0	2	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0012	3308	4	3	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0013	3308	4	4	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0014	3308	3	3	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0015	3306	2	0	0	2	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0016	3307	2	0	0	0	2	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0017	3307	2	0	2	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0018	3308	2	1	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0019	3306	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0020	3306	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0021	3306	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0022	3306	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0023	3302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0024	3306	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0025	3306	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0026	3306	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0027	3306	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0028	3303	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0029	3307	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0030	3307	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0031	3302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0032	3307	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0033	3307	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0034	3307	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0035	3308	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0036	3308	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0037	3308	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0038	3308	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0039	3308	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0040	3309	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0041	3308	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0042	3306	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	t0043	3306	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGN_chr1_151506387_151543692	0/1	t0001	1497	190	37	34	90	6	22	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0002	1496	49	6	9	28	0	6	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0003	1497	42	0	11	24	2	5	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0004	1503	13	1	5	7	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0005	1503	9	6	1	1	1	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0006	1492	7	7	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0007	1491	7	6	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0008	1485	6	5	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0009	1490	6	1	0	0	0	5	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0010	1496	6	4	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0011	1503	6	0	4	1	0	1	copy fasta	CGN	chr1	151506387	151543692