JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CGN_chr1_151506387_151543692	1/0	t0012	1490	5	4	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0013	1497	3	0	2	0	1	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0014	1502	3	1	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0015	1502	3	1	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0016	1498	2	0	1	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0017	1497	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0018	1496	2	2	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0019	1496	2	1	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0020	1515	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0021	1491	2	2	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0022	1496	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0023	1473	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0024	1485	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0025	1492	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0026	1490	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0027	1497	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0028	1497	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0029	1497	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0030	1496	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0031	1496	1	0	0	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0032	1504	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0033	1509	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0034	1502	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	t0035	1490	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGREF1_chr2_27095594_27124128	0/1	t0001	976	194	42	38	80	10	23	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0002	975	121	28	32	43	7	11	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	1/0	t0003	975	7	6	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0004	975	5	4	1	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0005	975	5	3	2	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0006	976	3	0	1	0	1	1	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0007	976	3	3	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0008	976	2	2	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0009	975	2	2	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0010	976	2	0	2	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0011	976	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0012	976	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0013	975	1	0	1	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0014	976	1	0	1	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0015	976	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0016	976	1	1	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0017	975	1	0	0	0	0	1	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	t0018	975	1	1	0	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGRRF1_chr14_54504906_54544292	1/0	t0001	964	269	69	44	125	2	28	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0002	964	41	7	6	27	0	1	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0003	964	9	0	9	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0004	964	4	1	2	0	1	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0005	964	3	0	1	0	0	2	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0006	964	3	0	0	3	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/1	t0007	964	2	0	0	0	1	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	t0008	980	2	0	0	2	0	0	copy fasta	CGRRF1	chr14	54504906	54544292