Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADARB2_chr10_1172313_1742525	0/0	t0027	6269	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0028	6269	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0029	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0030	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0031	6258	1	0	0	0	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0032	6304	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0033	6304	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0034	6353	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0035	6304	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0036	6304	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0037	6256	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0038	6256	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0039	6256	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0040	6206	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0041	6269	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0042	6269	1	0	0	0	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0043	6268	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0044	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0045	6258	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0046	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0047	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0048	6269	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0049	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0050	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0051	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0052	6269	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0053	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0054	6258	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0055	6258	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0056	6304	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0057	6304	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0058	6304	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0059	6304	1	0	0	0	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0060	6269	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0061	6207	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0062	6269	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0063	6269	1	0	0	0	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0064	6269	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0065	6269	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0066	6269	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	t0067	6268	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADAR_chr1_154577057_154613186	0/0	t0001	2936	108	18	18	55	5	12	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0002	2938	85	12	13	48	3	9	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0003	2938	82	4	23	40	2	13	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/1	t0004	2938	77	1	22	41	5	7	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	1/0	t0005	2930	26	25	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0006	2938	9	9	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0007	2936	7	4	3	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0008	2936	4	4	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0009	2937	4	4	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186