JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHAF1A_chr19_4397640_4448397	1/0	t0002	496	149	43	19	59	7	20	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0003	505	54	6	26	7	5	10	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0004	505	3	0	0	3	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0005	505	2	0	2	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0006	496	2	1	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0007	506	1	0	0	1	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0008	505	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0009	505	1	1	0	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0010	505	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1A_chr19_4397640_4448397	0/0	t0011	496	1	0	1	0	0	0	copy fasta	CHAF1A	chr19	4397640	4448397
CHAF1B_chr21_36380392_36424015	0/0	t0001	2787	150	24	46	50	6	24	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	1/1	t0002	2787	69	4	3	44	0	16	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0003	2788	21	16	4	0	1	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0004	2787	11	0	0	11	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0005	2788	10	5	3	0	2	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0006	2788	8	7	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0007	2788	7	1	0	6	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0008	2786	6	0	4	0	0	2	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0009	2788	6	6	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0010	2789	5	4	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0011	2788	4	0	4	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0012	2789	3	3	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0013	2788	3	2	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0014	2790	3	2	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0015	2786	3	1	0	1	1	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0016	2787	3	2	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0017	2786	2	2	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0018	2786	2	0	0	2	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0019	2788	2	1	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0020	2788	2	0	0	1	0	1	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0021	2788	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0022	2786	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0023	2790	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0024	2788	1	0	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0025	2786	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0026	2788	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0027	2787	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0028	2789	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0029	2788	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0030	2787	1	0	0	0	0	1	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0031	2788	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0032	2787	1	0	0	0	0	1	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0033	2787	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0034	2787	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0035	2786	1	0	0	0	0	1	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0036	2786	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0037	2787	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0038	2787	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0039	2787	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0040	2787	1	1	0	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015