JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHAF1B_chr21_36380392_36424015	0/0	t0041	2787	1	0	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0042	2787	1	0	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0043	2787	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0044	2787	1	0	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0045	2787	1	0	0	1	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAF1B_chr21_36380392_36424015	0/0	t0046	2789	1	0	1	0	0	0	copy fasta	CHAF1B	chr21	36380392	36424015
CHAMP1_chr13_114309503_114332322	1/1	t0001	1361	378	71	60	199	12	34	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0002	1361	13	1	7	0	0	5	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0003	1357	10	8	2	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0004	1361	2	0	0	2	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0005	1361	2	0	0	0	0	2	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0006	1361	2	1	0	1	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0007	1361	1	0	0	1	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0008	1361	1	0	1	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0009	1361	1	0	0	1	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0010	1361	1	0	0	0	0	1	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0011	1361	1	1	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0012	1361	1	1	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAMP1_chr13_114309503_114332322	0/0	t0013	1361	1	1	0	0	0	0	copy fasta	CHAMP1	chr13	114309503	114332322
CHAT_chr10_49609037_49672942	0/0	t0001	3050	67	12	10	40	1	4	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/1	t0002	3050	63	1	17	27	5	12	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0003	3050	41	28	8	5	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0004	3050	36	10	7	13	3	3	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0005	3050	36	7	1	28	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0006	3050	33	3	11	17	0	2	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0007	3050	32	2	7	12	4	7	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0008	3050	26	3	12	5	2	4	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0009	3050	18	1	1	16	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0010	3050	18	0	0	13	2	3	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	1/0	t0011	3050	7	4	2	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0012	3050	6	0	0	0	0	6	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0013	3050	5	4	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0014	3050	4	3	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0015	3050	3	3	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0016	3032	3	3	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0017	3050	1	0	0	0	0	1	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0018	3050	1	0	0	0	0	1	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0019	3050	1	0	0	0	0	1	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0020	3050	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0021	3050	1	0	0	0	1	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0022	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0023	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0024	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0025	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0026	3050	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0027	3050	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0028	3032	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0029	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0030	3050	1	0	0	1	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0031	3050	1	0	1	0	0	0	copy fasta	CHAT	chr10	49609037	49672942