JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHAT_chr10_49609037_49672942	0/0	t0032	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0033	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0034	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0035	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHAT_chr10_49609037_49672942	0/0	t0036	3050	1	1	0	0	0	0	copy fasta	CHAT	chr10	49609037	49672942
CHCHD10_chr22_23760834_23772972	0/1	t0001	272	428	96	82	185	16	48	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	t0002	272	2	2	0	0	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD10_chr22_23760834_23772972	0/0	t0003	272	1	0	0	1	0	0	copy fasta	CHCHD10	chr22	23760834	23772972
CHCHD1_chr10_73777048_73788652	0/0	t0001	494	327	78	58	141	12	38	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	t0002	494	10	0	0	10	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	t0003	494	3	3	0	0	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	t0004	494	1	1	0	0	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD1_chr10_73777048_73788652	0/0	t0005	494	1	0	0	1	0	0	copy fasta	CHCHD1	chr10	73777048	73788652
CHCHD2_chr7_56096573_56111476	0/1	t0001	342	379	89	53	194	13	29	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	1/0	t0002	342	48	1	12	14	5	15	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	t0003	343	9	0	9	0	0	0	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD2_chr7_56096573_56111476	0/0	t0004	342	6	6	0	0	0	0	copy fasta	CHCHD2	chr7	56096573	56111476
CHCHD3_chr7_132779870_133087090	1/1	t0001	921	303	72	62	115	16	36	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	t0002	921	3	2	1	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	t0003	921	1	0	0	1	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	t0004	921	1	1	0	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	t0005	921	1	0	1	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD3_chr7_132779870_133087090	0/0	t0006	921	1	1	0	0	0	0	copy fasta	CHCHD3	chr7	132779870	133087090
CHCHD4_chr3_14107077_14129870	0/1	t0001	1005	246	73	36	109	7	20	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	1/0	t0002	1005	131	6	22	75	5	22	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0003	1005	10	0	7	0	2	1	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0004	1005	9	0	6	3	0	0	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0005	1005	8	7	1	0	0	0	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0006	1003	8	8	0	0	0	0	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0007	1005	2	2	0	0	0	0	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0008	1005	1	0	0	1	0	0	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD4_chr3_14107077_14129870	0/0	t0009	1005	1	0	0	0	0	1	copy fasta	CHCHD4	chr3	14107077	14129870
CHCHD5_chr2_112579609_112594040	0/0	t0001	191	273	67	47	121	9	29	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	1/0	t0002	191	139	20	20	90	1	7	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/1	t0003	191	20	3	6	1	5	4	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	t0004	191	10	7	3	0	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	t0005	191	1	1	0	0	0	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD5_chr2_112579609_112594040	0/0	t0006	191	1	0	0	0	1	0	copy fasta	CHCHD5	chr2	112579609	112594040
CHCHD6_chr3_126699240_126965420	1/1	t0001	293	207	67	48	60	5	25	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	t0002	293	5	4	1	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	t0003	293	3	0	1	0	1	1	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD6_chr3_126699240_126965420	0/0	t0004	293	1	1	0	0	0	0	copy fasta	CHCHD6	chr3	126699240	126965420
CHCHD7_chr8_56206789_56223809	1/1	t0001	1440	358	71	67	164	14	40	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0002	1440	12	11	1	0	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0003	1440	7	7	0	0	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0004	1440	2	0	2	0	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0005	1440	1	1	0	0	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0006	1440	1	1	0	0	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0007	1440	1	1	0	0	0	0	copy fasta	CHCHD7	chr8	56206789	56223809
CHCHD7_chr8_56206789_56223809	0/0	t0008	1440	1	0	0	1	0	0	copy fasta	CHCHD7	chr8	56206789	56223809