JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHD2_chr15_92895324_93032996	0/0	t0016	3864	1	0	0	0	1	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0017	3864	1	0	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0018	3864	1	1	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0019	3867	1	1	0	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0020	3867	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0021	3867	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0022	3867	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0023	3867	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0024	3867	1	0	1	0	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD2_chr15_92895324_93032996	0/0	t0025	3867	1	0	0	1	0	0	copy fasta	CHD2	chr15	92895324	93032996
CHD3_chr17_7883789_7917755	1/1	t0001	1383	321	62	72	141	14	30	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0002	1382	15	14	1	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0003	1383	13	0	0	5	0	8	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0004	1383	9	8	0	1	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0005	1383	4	0	3	0	1	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0006	1383	1	0	0	0	1	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0007	1383	1	0	0	1	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0008	1383	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD3_chr17_7883789_7917755	0/0	t0009	1383	1	1	0	0	0	0	copy fasta	CHD3	chr17	7883789	7917755
CHD4_chr12_6565082_6612379	1/1	t0001	753	238	43	54	104	9	26	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0002	753	65	46	5	4	3	7	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0003	755	64	0	10	49	0	5	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0004	755	2	2	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0005	753	2	0	0	2	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0006	753	1	1	0	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0007	753	1	0	0	1	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD4_chr12_6565082_6612379	0/0	t0008	753	1	0	1	0	0	0	copy fasta	CHD4	chr12	6565082	6612379
CHD5_chr1_6096787_6185321	0/0	t0001	3988	31	20	6	0	1	4	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0002	3984	25	0	6	16	2	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0003	3986	24	3	0	14	0	7	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0004	3986	24	2	4	14	2	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0005	3986	20	9	7	0	0	4	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0006	3988	18	1	1	16	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0007	3986	15	0	0	13	1	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0008	3985	13	0	0	13	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/1	t0009	3988	11	0	9	0	1	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0010	3985	9	0	0	8	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0011	3988	9	9	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0012	3986	6	4	2	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	1/0	t0013	3986	5	0	4	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0014	3986	5	5	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0015	3984	4	0	0	2	0	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0016	3988	4	0	2	0	1	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0017	3988	4	2	1	0	1	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0018	3986	4	0	0	4	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0019	3988	3	2	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0020	3988	3	3	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0021	3988	3	0	0	3	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0022	3985	3	0	0	3	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0023	3988	3	0	0	0	0	3	copy fasta	CHD5	chr1	6096787	6185321