JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHD5_chr1_6096787_6185321	0/0	t0024	3986	3	0	0	3	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0025	3989	3	3	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0026	3988	2	2	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0027	3986	2	0	0	0	0	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0028	3988	2	1	0	0	1	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0029	3987	2	0	1	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0030	3986	2	0	0	2	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0031	3987	2	0	0	0	0	2	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0032	3986	2	2	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0033	3987	2	2	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0034	3988	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0035	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0036	3985	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0037	3988	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0038	3986	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0039	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0040	3988	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0041	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0042	4029	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0043	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0044	3988	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0045	3988	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0046	3984	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0047	3984	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0048	3989	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0049	3984	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0050	3986	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0051	3986	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0052	3987	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0053	3988	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0054	3988	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0055	3988	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0056	3985	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0057	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0058	3988	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0059	3988	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0060	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0061	3988	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0062	3987	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0063	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0064	3989	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0065	3987	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0066	3988	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0067	3986	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0068	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0069	3986	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0070	3986	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0071	3986	1	0	0	1	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0072	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0073	3986	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321