JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHD5_chr1_6096787_6185321	0/0	t0074	3986	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0075	3987	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0076	3987	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0077	3987	1	0	0	0	0	1	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0078	3989	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0079	3989	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0080	3987	1	0	1	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0081	3987	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0082	3987	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0083	3987	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0084	3988	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD5_chr1_6096787_6185321	0/0	t0085	3986	1	1	0	0	0	0	copy fasta	CHD5	chr1	6096787	6185321
CHD6_chr20_41397083_41623377	0/1	t0001	2572	224	64	36	94	8	21	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0002	2572	59	4	14	31	2	8	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0003	2572	12	10	1	0	1	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0004	2572	8	0	2	6	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0005	2572	5	0	0	5	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	1/0	t0006	2572	5	0	3	0	1	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0007	2572	3	0	0	3	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0008	2572	2	0	0	2	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0009	2572	2	2	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0010	2572	1	0	0	1	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0011	2572	1	0	0	0	0	1	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0012	2572	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD6_chr20_41397083_41623377	0/0	t0013	2572	1	1	0	0	0	0	copy fasta	CHD6	chr20	41397083	41623377
CHD7_chr8_60673740_60873028	0/1	t0001	2616	43	1	14	18	2	7	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	1/0	t0002	2613	37	4	13	13	4	2	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0003	2616	20	0	0	16	3	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0004	2619	19	6	2	10	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0005	2615	14	9	2	0	1	2	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0006	2615	13	9	0	4	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0007	2616	11	3	4	3	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0008	2619	8	0	0	7	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0009	2616	6	4	2	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0010	2616	4	4	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0011	2616	4	0	0	3	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0012	2616	4	2	1	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0013	2616	4	2	0	0	0	2	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0014	2619	3	2	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0015	2622	3	0	0	1	2	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0016	2616	3	1	0	0	0	2	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0017	2613	2	2	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0018	2613	2	2	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0019	2613	2	0	1	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0020	2657	2	0	0	0	0	2	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0021	2619	2	0	0	2	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0022	2649	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0023	2634	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0024	2616	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0025	2616	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028