JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHD7_chr8_60673740_60873028	0/0	t0026	2616	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0027	2959	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0028	2615	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0029	2615	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0030	2619	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0031	2619	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0032	2622	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0033	2601	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0034	2625	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0035	2630	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0036	2613	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0037	2613	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0038	2619	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0039	2619	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0040	2622	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0041	2622	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0042	2622	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0043	2631	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0044	2631	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0045	2640	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0046	2640	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0047	2643	1	0	0	1	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0048	2655	1	0	0	0	0	1	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0049	2619	1	1	0	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0050	2618	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD7_chr8_60673740_60873028	0/0	t0051	2624	1	0	1	0	0	0	copy fasta	CHD7	chr8	60673740	60873028
CHD8_chr14_21380199_21461123	1/1	t0001	722	192	45	41	70	10	24	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	t0002	722	40	22	10	6	0	2	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	t0003	721	22	21	1	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	t0004	722	4	0	0	4	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	t0005	721	1	1	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD8_chr14_21380199_21461123	0/0	t0006	722	1	1	0	0	0	0	copy fasta	CHD8	chr14	21380199	21461123
CHD9NB_chr16_53036484_53057897	1/0	t0001	2838	99	10	29	48	3	8	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/1	t0002	2838	57	14	4	22	5	11	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0003	2838	40	2	14	12	5	7	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0004	2837	40	0	8	25	0	7	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0005	2838	28	0	5	20	1	2	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0006	2838	19	1	1	15	0	2	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0007	2838	13	0	0	12	1	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0008	2839	9	8	1	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0009	2837	8	0	0	4	0	4	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0010	2838	6	6	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0011	2837	6	0	0	6	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0012	2834	5	5	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0013	2836	4	4	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0014	2837	4	0	1	3	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0015	2839	4	4	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0016	2838	3	3	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0017	2838	3	0	2	0	0	1	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0018	2839	3	3	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897