JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHD9NB_chr16_53036484_53057897	0/0	t0019	2839	2	2	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0020	2836	2	2	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0021	2838	2	0	2	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0022	2837	2	0	0	2	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0023	2839	2	2	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0024	2839	2	2	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0025	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0026	2838	1	0	0	0	0	1	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0027	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0028	2837	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0029	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0030	2839	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0031	2837	1	0	1	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0032	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0033	2839	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0034	2836	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0035	2836	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0036	2837	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0037	2834	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0038	2839	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0039	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0040	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0041	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0042	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0043	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0044	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0045	2838	1	0	1	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0046	2837	1	0	0	0	0	1	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0047	2838	1	0	0	0	0	1	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0048	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0049	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0050	2838	1	0	1	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0051	2836	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0052	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0053	2839	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0054	2837	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0055	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0056	2839	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0057	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0058	2838	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0059	2837	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0060	2840	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0061	2839	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0062	2840	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0063	2840	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0064	2838	1	0	0	0	0	1	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0065	2836	1	1	0	0	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0066	2838	1	0	0	0	1	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9NB_chr16_53036484_53057897	0/0	t0067	2838	1	0	0	1	0	0	copy fasta	CHD9NB	chr16	53036484	53057897
CHD9_chr16_53049991_53332497	1/1	t0001	2854	141	31	19	59	9	21	copy fasta	CHD9	chr16	53049991	53332497