Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAR_chr1_154577057_154613186	0/0	t0010	2946	3	0	0	3	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0011	2938	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0012	2930	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0013	2930	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0014	2938	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0015	2938	1	0	1	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0016	2938	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0017	2936	1	0	0	0	0	1	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0018	2936	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0019	2928	1	0	0	0	1	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0020	2936	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	t0021	2938	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAT1_chr16_75591868_75628281	0/0	t0001	4258	88	5	20	52	1	10	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	1/0	t0002	4249	70	7	23	19	6	14	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/1	t0003	4259	33	6	7	15	2	2	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0004	4259	16	9	1	6	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0005	4250	8	3	4	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0006	4259	7	0	2	3	0	2	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0007	4249	7	7	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0008	4259	6	1	2	2	1	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0009	4258	5	1	2	2	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0010	4261	5	5	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0011	4258	5	4	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0012	4259	5	5	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0013	4259	5	0	1	3	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0014	4249	4	4	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0015	4260	3	2	0	0	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0016	4260	3	3	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0017	4258	3	3	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0018	4260	3	0	0	3	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0019	4257	3	1	0	2	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0020	4258	3	0	0	3	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0021	4258	3	3	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0022	4260	2	0	0	2	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0023	4260	2	0	0	2	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0024	4260	2	0	0	2	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0025	4259	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0026	4259	2	0	0	1	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0027	4259	2	0	0	2	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0028	4249	2	0	2	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0029	4248	2	1	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0030	4249	2	0	0	0	2	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0031	4248	2	0	1	0	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0032	4249	1	0	0	0	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0033	4258	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0034	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0035	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0036	4259	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0037	4258	1	0	0	0	1	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0038	4257	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281