JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHD9_chr16_53049991_53332497	0/0	t0002	2852	35	6	4	20	1	4	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0003	2852	21	21	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0004	2854	12	12	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0005	2853	8	3	0	3	0	2	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0006	2854	3	0	0	3	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0007	2854	2	2	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0008	2854	2	0	0	2	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0009	2854	2	0	0	2	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0010	2852	2	0	0	2	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0011	2853	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0012	2854	1	0	1	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0013	2852	1	0	1	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0014	2853	1	0	1	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0015	2854	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0016	2851	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0017	2852	1	0	0	0	0	1	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0018	2854	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0019	2864	1	0	0	1	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHD9_chr16_53049991_53332497	0/0	t0020	2854	1	1	0	0	0	0	copy fasta	CHD9	chr16	53049991	53332497
CHDH_chr3_53807335_53851419	0/0	t0001	5903	59	1	18	24	8	8	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0002	5904	19	0	2	12	0	5	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0003	5904	14	0	3	11	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0004	5912	12	4	6	0	1	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0005	5908	6	0	2	4	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0006	5908	6	0	0	5	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0007	5904	6	0	1	2	1	2	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0008	5903	6	0	0	5	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0009	5904	6	1	2	2	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0010	5905	6	6	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0011	5909	5	0	1	4	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0012	5907	5	0	0	4	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0013	5920	5	0	1	4	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0014	5911	5	5	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0015	5919	4	0	2	2	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0016	5905	4	0	2	2	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0017	5913	4	0	1	0	1	2	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0018	5904	4	0	0	4	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0019	5903	4	0	0	4	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0020	5911	4	0	2	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0021	5904	4	4	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0022	5900	3	2	0	0	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0023	5907	3	0	0	3	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0024	5903	3	0	0	3	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0025	5912	3	0	0	0	1	2	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0026	5903	3	0	3	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0027	5902	3	0	0	2	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0028	5904	3	0	0	3	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0029	5900	3	0	1	1	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0030	5906	2	0	0	1	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0031	5904	2	2	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419