JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CHDH_chr3_53807335_53851419	0/0	t0032	5902	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0033	5909	2	0	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0034	5908	2	0	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0035	5907	2	0	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0036	5907	2	0	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0037	5920	2	0	2	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0038	5920	2	0	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0039	5904	2	0	1	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0040	5913	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0041	5911	2	1	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0042	5905	2	0	1	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0043	5905	2	0	1	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0044	5904	2	0	1	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/1	t0045	5906	2	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0046	5896	2	0	0	2	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0047	5902	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0048	5905	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0049	5904	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0050	5911	2	1	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0051	5901	2	0	1	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0052	5902	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0053	5901	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0054	5901	2	0	1	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0055	5899	2	0	1	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0056	5915	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0057	5900	2	2	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0058	5904	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0059	5910	1	0	0	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0060	5911	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0061	5904	1	0	0	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0062	5904	1	0	0	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0063	5903	1	0	0	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0064	5913	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0065	5908	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0066	5903	1	0	0	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0067	5906	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0068	5903	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0069	5911	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0070	5910	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0071	5911	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0072	5912	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0073	5907	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0074	5907	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0075	5904	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0076	5901	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0077	5905	1	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0078	5899	1	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0079	5900	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0080	5899	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0081	5898	1	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419