JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHDH_chr3_53807335_53851419	0/0	t0082	5903	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0083	5921	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0084	5912	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0085	5913	1	0	0	0	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0086	5912	1	0	0	0	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0087	5907	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0088	5906	1	0	0	0	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0089	5908	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0090	5907	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0091	5906	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0092	5906	1	0	0	0	0	1	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0093	5905	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0094	5908	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0095	5907	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0096	5919	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0097	5921	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0098	5919	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0099	5910	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0100	5910	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0101	5908	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0102	5916	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0103	5921	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0104	5918	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0105	5915	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0106	5905	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0107	5906	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0108	5905	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0109	5916	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0110	5915	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0111	5911	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0112	5904	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0113	5903	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0114	5902	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0115	5902	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0116	5903	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0117	5906	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0118	5906	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0119	5904	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0120	5906	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0121	5905	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0122	5909	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0123	5905	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0124	5905	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0125	5905	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0126	5913	1	0	0	0	1	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0127	5912	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0128	5910	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0129	5903	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0130	5904	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	t0131	5905	1	0	1	0	0	0	copy fasta	CHDH	chr3	53807335	53851419