JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHEK1_chr11_125620163_125662147	0/1	t0001	2703	108	10	15	65	5	12	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0002	2698	80	22	13	37	1	7	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0003	2698	72	2	19	34	7	10	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	1/0	t0004	2698	56	13	8	33	0	1	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0005	2702	34	22	4	4	1	3	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0006	2698	6	2	2	0	1	1	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0007	2698	4	0	3	0	0	1	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0008	2703	3	3	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0009	2698	3	3	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0010	2703	2	0	0	2	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0011	2698	2	2	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0012	2702	2	1	0	0	0	1	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0013	2702	2	2	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0014	2703	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0015	2703	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0016	2703	1	0	0	1	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0017	2703	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0018	2703	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0019	2702	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0020	2698	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0021	2698	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0022	2702	1	0	0	0	1	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	t0023	2702	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK2_chr22_28682743_28746820	1/1	t0001	213	381	86	67	168	16	42	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	t0002	213	2	2	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	t0003	213	1	0	1	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHERP_chr19_16512894_16547437	1/1	t0001	1325	172	25	39	78	6	22	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0002	1325	95	39	14	23	2	17	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0003	1325	29	6	13	5	1	4	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0004	1325	15	9	4	0	1	1	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0005	1325	2	0	1	0	0	1	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0006	1325	2	2	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0007	1325	1	0	0	1	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0008	1325	1	0	0	1	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0009	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0010	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0011	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0012	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0013	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0014	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0015	1325	1	0	0	0	0	1	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0016	1325	1	0	1	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0017	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0018	1325	1	0	0	1	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0019	1325	1	0	0	1	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0020	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	t0021	1325	1	1	0	0	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHFR_chr12_132827356_132892605	0/1	t0001	9308	30	0	10	4	6	9	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0002	9416	25	8	9	1	2	5	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0003	9308	23	0	4	15	1	3	copy fasta	CHFR	chr12	132827356	132892605