JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHFR_chr12_132827356_132892605	0/0	t0004	9416	13	1	2	10	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0005	9416	13	0	3	10	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0006	9471	11	0	7	2	0	2	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0007	9308	8	1	2	0	2	3	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0008	9728	8	0	4	4	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0009	9273	7	7	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0010	9728	7	0	0	7	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0011	9763	7	0	0	7	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0012	9506	7	0	0	6	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0013	9308	6	5	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0014	9763	6	4	2	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0015	9728	6	0	1	4	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0016	9728	5	5	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0017	9308	4	0	3	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0018	9238	4	0	0	4	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0019	9308	4	3	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0020	9413	4	3	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0021	9235	4	4	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0022	9309	3	0	0	2	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0023	9273	3	3	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0024	9271	3	3	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0025	9798	3	0	0	3	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0026	9728	3	0	0	3	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0027	9763	3	0	0	3	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0028	9416	3	0	1	0	0	2	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0029	9417	3	2	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0030	9416	3	0	0	0	3	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0031	9416	3	0	0	3	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0032	9416	3	0	0	3	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0033	9471	3	0	0	3	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0034	9308	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0035	9273	2	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0036	9308	2	0	2	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0037	9308	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	1/0	t0038	9270	2	1	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0039	9270	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0040	9693	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0041	9728	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0042	9763	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0043	9728	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0044	9728	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0045	9381	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0046	9416	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0047	9416	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0048	9416	2	0	1	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0049	9451	2	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0050	9471	2	0	0	0	2	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0051	9401	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0052	9471	2	0	0	2	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0053	9471	2	0	0	0	0	2	copy fasta	CHFR	chr12	132827356	132892605