JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CHFR_chr12_132827356_132892605	0/0	t0104	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0105	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0106	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0107	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0108	9728	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0109	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0110	9729	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0111	9693	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0112	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0113	9763	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0114	9764	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0115	9763	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0116	9693	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0117	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0118	9728	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0119	9273	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0120	9416	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0121	9416	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0122	9416	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0123	9416	1	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0124	9416	1	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0125	9417	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0126	9416	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0127	9381	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0128	9417	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0129	9416	1	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0130	9416	1	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0131	9416	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0132	9416	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0133	9416	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0134	9417	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0135	9417	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0136	9452	1	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0137	9346	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0138	9417	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0139	9416	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0140	9417	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0141	9416	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0142	9486	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0143	9471	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0144	9506	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0145	9541	1	0	0	1	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0146	9472	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0147	9471	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0148	9472	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0149	9472	1	0	0	0	1	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0150	9471	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0151	9408	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0152	9437	1	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	t0153	9436	1	0	1	0	0	copy fasta	CHFR	chr12	132827356	132892605