JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHGA_chr14_92918150_92940285	0/1	t0001	612	374	69	61	189	15	39	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0002	612	45	5	17	13	3	7	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0003	612	8	8	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0004	612	7	7	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0005	612	4	4	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0006	612	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0007	612	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0008	612	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0009	612	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0010	612	1	0	0	0	0	1	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0011	612	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0012	612	1	0	0	0	0	1	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	t0013	612	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGB_chr20_5906510_5930353	1/0	t0001	429	240	58	56	88	11	26	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/1	t0002	429	117	22	22	50	7	15	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	t0003	429	65	0	0	62	0	3	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	t0004	429	16	16	0	0	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	t0005	429	1	0	0	1	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHGB_chr20_5906510_5930353	0/0	t0006	429	1	0	0	1	0	0	copy fasta	CHGB	chr20	5906510	5930353
CHI3L1_chr1_203173931_203191704	1/1	t0001	596	417	88	75	189	15	48	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	t0002	596	36	0	7	29	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	t0003	596	9	9	0	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	t0004	596	5	0	2	2	1	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L1_chr1_203173931_203191704	0/0	t0005	596	1	1	0	0	0	0	copy fasta	CHI3L1	chr1	203173931	203191704
CHI3L2_chr1_111222713_111248440	0/0	t0001	244	178	6	38	104	8	22	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	t0002	244	105	7	24	64	2	8	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	1/0	t0003	244	81	67	4	9	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/1	t0004	244	62	7	8	30	4	12	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	t0005	244	7	7	0	0	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHI3L2_chr1_111222713_111248440	0/0	t0006	244	1	0	0	1	0	0	copy fasta	CHI3L2	chr1	111222713	111248440
CHIA_chr1_111285851_111325563	0/0	t0001	268	199	16	44	118	6	15	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	1/0	t0002	266	175	48	22	71	9	24	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	t0003	276	29	18	7	0	0	4	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/1	t0004	278	9	3	3	0	1	1	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	t0005	266	8	8	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	t0006	268	3	0	0	3	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	t0007	266	1	1	0	0	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	t0008	238	1	0	0	1	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIA_chr1_111285851_111325563	0/0	t0009	268	1	0	0	1	0	0	copy fasta	CHIA	chr1	111285851	111325563
CHIC1_chrX_73558197_73692111	0/0	t0001	6195	123	10	27	62	6	18	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0002	6195	29	15	9	0	3	2	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0003	6197	16	15	1	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0004	6195	9	8	1	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0005	6195	4	4	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0006	6195	3	3	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0007	6195	3	0	3	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0008	6195	3	3	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0009	6195	2	0	0	2	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	1/0	t0010	6195	2	1	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0011	6195	2	1	1	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111