JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHIC1_chrX_73558197_73692111	0/1	t0012	6195	1	0	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0013	6195	1	0	0	1	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0014	6195	1	0	0	0	0	1	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0015	6195	1	0	0	1	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0016	6195	1	0	0	1	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0017	6195	1	1	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0018	6195	1	0	1	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0019	6195	1	0	0	0	0	1	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0020	6195	1	0	0	1	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0021	6197	1	1	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0022	6197	1	1	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC1_chrX_73558197_73692111	0/0	t0023	6195	1	1	0	0	0	0	copy fasta	CHIC1	chrX	73558197	73692111
CHIC2_chr4_54004789_54069605	0/1	t0001	612	146	54	22	48	8	13	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0002	611	68	8	17	21	7	15	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0003	614	10	6	3	0	0	1	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	1/0	t0004	612	5	4	0	0	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0005	613	5	4	0	0	0	1	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0006	613	4	4	0	0	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0007	611	2	2	0	0	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0008	611	1	1	0	0	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0009	613	1	1	0	0	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0010	611	1	0	0	1	0	0	copy fasta	CHIC2	chr4	54004789	54069605
CHIC2_chr4_54004789_54069605	0/0	t0011	612	1	0	0	0	1	0	copy fasta	CHIC2	chr4	54004789	54069605
CHID1_chr11_862859_915810	0/0	t0001	2079	320	68	65	145	12	30	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/1	t0002	2079	31	3	8	11	3	5	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0003	2079	3	3	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0004	2079	2	1	1	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0005	2079	2	0	0	2	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0006	2079	2	2	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0007	2079	2	0	0	0	1	1	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0008	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0009	2079	1	0	0	0	0	1	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0010	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0011	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0012	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0013	2079	1	0	0	0	0	1	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0014	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0015	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0016	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0017	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0018	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0019	2054	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0020	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0021	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0022	2079	1	0	0	0	0	1	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0023	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0024	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0025	2079	1	1	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	1/0	t0026	2079	1	0	0	0	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0027	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810