Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAT1_chr16_75591868_75628281	0/0	t0039	4259	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0040	4259	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0041	4259	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0042	4258	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0043	4258	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0044	4257	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0045	4257	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0046	4256	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0047	4257	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0048	4260	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0049	4259	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0050	4258	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0051	4259	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0052	4275	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0053	4260	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0054	4260	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0055	4259	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0056	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0057	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0058	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0059	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0060	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0061	4257	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0062	4256	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0063	4258	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0064	4248	1	0	0	0	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0065	4248	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0066	4251	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0067	4250	1	0	0	0	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0068	4249	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0069	4249	1	0	0	0	1	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0070	4249	1	0	0	0	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0071	4248	1	0	1	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0072	4248	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0073	4257	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	t0074	4258	1	1	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT2_chr6_143417832_143455695	0/0	t0001	5679	15	1	4	9	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0002	5652	12	3	4	0	3	2	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0003	5675	12	4	3	5	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0004	5677	9	3	0	3	0	3	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0005	5701	6	0	0	5	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0006	5656	6	3	0	0	3	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0007	5681	6	1	0	2	0	3	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0008	5683	6	2	2	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/1	t0009	5675	5	0	2	0	1	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0010	5669	5	0	5	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0011	5654	4	0	2	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0012	5652	4	0	4	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0013	5675	4	0	3	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0014	5675	4	0	3	0	1	0	copy fasta	ADAT2	chr6	143417832	143455695