JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHID1_chr11_862859_915810	0/0	t0028	2079	1	0	0	0	0	1	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0029	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0030	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHID1_chr11_862859_915810	0/0	t0031	2079	1	0	0	1	0	0	copy fasta	CHID1	chr11	862859	915810
CHIT1_chr1_203211079_203234673	1/1	t0001	848	450	78	83	222	18	47	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	t0002	848	22	22	0	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	t0003	848	8	0	0	7	0	1	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	t0004	848	2	0	2	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	t0005	848	1	0	0	1	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHIT1_chr1_203211079_203234673	0/0	t0006	848	1	0	1	0	0	0	copy fasta	CHIT1	chr1	203211079	203234673
CHKA_chr11_68047859_68126388	0/1	t0001	1350	98	16	24	34	7	16	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	1/0	t0002	1341	61	12	10	24	4	10	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0003	1341	32	4	2	25	0	1	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0004	1341	23	23	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0005	1341	14	6	2	4	1	1	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0006	1350	9	9	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0007	1341	8	5	1	2	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0008	1339	5	4	1	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0009	1341	4	0	2	0	2	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0010	1350	3	0	3	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0011	1341	2	2	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0012	1341	2	0	0	2	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0013	1341	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0014	1341	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0015	1341	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0016	1341	1	0	1	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0017	1339	1	1	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0018	1350	1	1	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0019	1350	1	1	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0020	1350	1	1	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0021	1350	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0022	1350	1	0	1	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0023	1350	1	1	0	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0024	1350	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0025	1350	1	0	1	0	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0026	1348	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKA_chr11_68047859_68126388	0/0	t0027	1341	1	0	0	1	0	0	copy fasta	CHKA	chr11	68047859	68126388
CHKB_chr22_50573963_50587849	1/1	t0001	287	259	84	47	80	15	31	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0002	273	64	0	9	45	0	10	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0003	287	44	15	3	25	0	1	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0004	287	40	0	7	29	1	3	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0005	287	3	0	0	2	0	1	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0006	287	2	1	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0007	287	2	0	2	0	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0008	273	1	0	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHKB_chr22_50573963_50587849	0/0	t0009	287	1	0	0	1	0	0	copy fasta	CHKB	chr22	50573963	50587849
CHL1_chr3_191763_414417	0/1	t0001	4181	121	18	28	54	6	14	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0002	4181	54	6	7	27	3	11	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0003	4181	20	4	7	5	0	4	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0004	4181	9	8	1	0	0	0	copy fasta	CHL1	chr3	191763	414417