JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHL1_chr3_191763_414417	0/0	t0005	4181	5	2	3	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0006	4181	4	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0007	4173	4	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0008	4181	4	4	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0009	4181	3	0	0	3	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0010	4182	3	0	1	2	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0011	4181	3	3	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0012	4182	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0013	4182	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0014	4181	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0015	4181	2	0	0	0	0	2	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0016	4173	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0017	4181	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0018	4181	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	1/0	t0019	4182	2	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0020	4181	2	1	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0021	4181	2	0	0	1	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0022	4181	2	0	1	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0023	4181	2	2	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0024	4182	2	0	2	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0025	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0026	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0027	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0028	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0029	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0030	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0031	4181	1	0	0	0	1	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0032	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0033	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0034	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0035	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0036	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0037	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0038	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0039	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0040	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0041	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0042	4181	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0043	4181	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0044	4182	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0045	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0046	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0047	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0048	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0049	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0050	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0051	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0052	4181	1	0	0	1	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0053	4182	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0054	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417