JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHL1_chr3_191763_414417	0/0	t0055	4181	1	0	1	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0056	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0057	4182	1	0	0	0	0	1	copy fasta	CHL1	chr3	191763	414417
CHL1_chr3_191763_414417	0/0	t0058	4181	1	1	0	0	0	0	copy fasta	CHL1	chr3	191763	414417
CHML_chr1_241623851_241645369	0/0	t0001	5741	63	3	17	34	1	8	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0002	5741	63	1	3	56	0	3	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	1/0	t0003	5741	63	7	13	36	2	4	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/1	t0004	5738	59	9	7	29	2	11	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0005	5738	22	3	2	9	2	6	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0006	5741	14	4	3	7	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0007	5741	13	12	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0008	5734	11	1	6	4	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0009	5738	9	3	2	4	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0010	5741	8	1	0	6	0	1	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0011	5738	8	5	2	0	1	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0012	5741	7	0	2	0	0	5	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0013	5741	7	7	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0014	5738	7	0	1	6	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0015	5741	6	6	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0016	5741	6	0	2	0	2	2	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0017	5741	6	6	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0018	5725	4	4	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0019	5741	4	3	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0020	5741	4	3	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0021	5741	3	3	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0022	5741	3	0	1	0	2	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0023	5738	3	3	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0024	5740	3	3	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0025	5741	3	0	0	3	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0026	5741	2	0	1	0	0	1	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0027	5737	2	2	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0028	5741	2	2	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0029	5741	2	0	0	0	0	2	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0030	5741	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0031	5741	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0032	5741	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0033	5741	2	0	0	2	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0034	5741	2	1	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0035	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0036	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0037	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0038	5738	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0039	5738	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0040	5741	1	0	0	0	1	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0041	5741	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0042	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0043	5741	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0044	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0045	5741	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0046	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369