JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHML_chr1_241623851_241645369	0/0	t0047	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0048	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0049	5741	1	0	0	0	1	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0050	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0051	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0052	5741	1	0	0	0	0	1	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0053	5741	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0054	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0055	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0056	5738	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0057	5738	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0058	5738	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0059	5728	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0060	5738	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0061	5741	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0062	5741	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0063	5741	1	1	0	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0064	5741	1	0	0	0	0	1	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0065	5741	1	0	0	0	1	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0066	5741	1	0	0	1	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0067	5741	1	0	1	0	0	0	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0068	5741	1	0	0	0	0	1	copy fasta	CHML	chr1	241623851	241645369
CHML_chr1_241623851_241645369	0/0	t0069	5741	1	0	0	0	1	0	copy fasta	CHML	chr1	241623851	241645369
CHMP1A_chr16_89639435_89662708	1/1	t0001	1752	218	56	45	79	5	31	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0002	1749	78	0	0	73	0	5	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0003	1752	47	3	23	5	6	10	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0004	1752	9	8	1	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0005	1752	7	6	1	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0006	1752	6	3	1	0	0	2	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0007	1752	5	5	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0008	1752	4	0	4	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0009	1752	2	2	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0010	1752	2	2	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0011	1752	2	2	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0012	1752	2	2	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0013	1752	2	2	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0014	1752	1	1	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0015	1749	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0016	1752	1	0	1	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0017	1752	1	1	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0018	1752	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0019	1752	1	0	0	1	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0020	1752	1	1	0	0	0	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1A_chr16_89639435_89662708	0/0	t0021	1752	1	0	0	0	1	0	copy fasta	CHMP1A	chr16	89639435	89662708
CHMP1B_chr18_11846413_11859444	0/0	t0001	2431	262	51	57	116	10	28	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0002	2431	78	2	2	68	2	4	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0003	2431	15	0	5	3	4	3	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0004	2447	12	12	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0005	2429	9	9	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	1/0	t0006	2433	9	8	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444