JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHMP1B_chr18_11846413_11859444	0/0	t0007	2431	8	6	2	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0008	2431	7	0	0	0	0	7	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/1	t0009	2431	7	0	5	0	0	1	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0010	2432	5	0	4	1	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0011	2432	3	0	0	3	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0012	2431	3	3	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0013	2432	3	0	0	3	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0014	2431	2	2	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0015	2431	2	2	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0016	2431	1	0	0	1	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0017	2432	1	0	0	0	0	1	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0018	2431	1	0	0	0	0	1	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0019	2432	1	0	0	0	0	1	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0020	2431	1	1	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0021	2431	1	0	0	1	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0022	2429	1	1	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0023	2431	1	0	0	1	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0024	2431	1	0	1	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0025	2431	1	1	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0026	2450	1	1	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0027	2431	1	0	0	1	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP1B_chr18_11846413_11859444	0/0	t0028	2447	1	1	0	0	0	0	copy fasta	CHMP1B	chr18	11846413	11859444
CHMP2A_chr19_58546566_58560105	1/1	t0001	226	411	90	69	194	18	38	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	t0002	226	3	3	0	0	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	t0003	226	2	2	0	0	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	t0004	226	2	0	0	2	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	t0005	226	1	1	0	0	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2A_chr19_58546566_58560105	0/0	t0006	226	1	0	1	0	0	0	copy fasta	CHMP2A	chr19	58546566	58560105
CHMP2B_chr3_87222309_87260556	1/1	t0001	1949	278	74	42	119	11	30	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0002	1949	101	1	22	61	3	14	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0003	1949	6	1	2	3	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0004	1949	5	5	0	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0005	1949	4	0	0	4	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0006	1949	3	0	3	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0007	1949	2	0	0	2	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0008	1949	2	2	0	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0009	1949	2	1	1	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0010	1949	1	0	1	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0011	1949	1	0	0	1	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0012	1949	1	0	0	1	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0013	1949	1	0	1	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0014	1949	1	1	0	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0015	1949	1	1	0	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0016	1949	1	1	0	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0017	1949	1	0	0	1	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0018	1949	1	1	0	0	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0019	1949	1	0	0	1	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP2B_chr3_87222309_87260556	0/0	t0020	1949	1	0	0	1	0	0	copy fasta	CHMP2B	chr3	87222309	87260556
CHMP3_chr2_86498430_86568443	0/0	t0001	2465	97	1	27	50	5	14	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	1/1	t0002	2470	56	22	14	7	4	7	copy fasta	CHMP3	chr2	86498430	86568443