JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHMP3_chr2_86498430_86568443	0/0	t0003	2465	48	0	3	44	0	1	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0004	2469	31	17	8	4	2	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0005	2471	19	8	4	3	1	3	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0006	2467	16	13	2	0	0	1	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0007	2467	13	13	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0008	2464	10	1	2	5	2	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0009	2466	8	0	1	5	0	2	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0010	2466	5	0	0	5	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0011	2468	5	4	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0012	2465	3	0	0	3	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0013	2465	2	0	0	0	0	2	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0014	2465	2	0	2	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0015	2470	2	2	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0016	2468	2	1	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0017	2465	1	0	0	1	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0018	2470	1	0	0	1	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0019	2466	1	0	0	0	0	1	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0020	2464	1	0	0	1	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0021	2465	1	0	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0022	2470	1	1	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0023	2470	1	1	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0024	2471	1	1	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0025	2470	1	0	0	0	0	1	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0026	2468	1	1	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0027	2465	1	0	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0028	2468	1	0	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0029	2471	1	1	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0030	2470	1	0	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0031	2470	1	1	0	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0032	2465	1	0	0	1	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP3_chr2_86498430_86568443	0/0	t0033	2468	1	0	1	0	0	0	copy fasta	CHMP3	chr2	86498430	86568443
CHMP4A_chr14_24204615_24218488	1/1	t0001	312	410	87	71	192	16	42	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	t0002	319	6	6	0	0	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	t0003	319	1	1	0	0	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4A_chr14_24204615_24218488	0/0	t0004	312	1	0	1	0	0	0	copy fasta	CHMP4A	chr14	24204615	24218488
CHMP4B_chr20_33806348_33859366	0/0	t0001	928	204	37	36	104	7	20	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	1/1	t0002	928	111	38	28	22	3	18	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	t0003	928	9	9	0	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	t0004	928	3	3	0	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	t0005	928	2	2	0	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	t0006	928	1	0	1	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	t0007	928	1	0	1	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4B_chr20_33806348_33859366	0/0	t0008	928	1	1	0	0	0	0	copy fasta	CHMP4B	chr20	33806348	33859366
CHMP4C_chr8_81727448_81764515	0/0	t0001	1151	165	4	24	109	8	20	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0002	1151	100	31	20	33	6	10	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	1/0	t0003	1151	57	17	11	23	0	5	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0004	1151	18	17	1	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0005	1151	14	2	0	8	0	4	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/1	t0006	1150	13	3	7	0	0	2	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0007	1151	12	0	2	9	0	1	copy fasta	CHMP4C	chr8	81727448	81764515