JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHMP4C_chr8_81727448_81764515	0/0	t0008	1151	4	3	1	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0009	1151	4	4	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0010	1150	3	2	0	0	0	1	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0011	1151	3	3	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0012	1151	2	0	2	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0013	1150	2	0	1	0	0	1	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0014	1151	2	2	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0015	1151	2	1	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0016	1151	1	1	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0017	1151	1	0	0	1	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0018	1151	1	1	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0019	1150	1	1	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0020	1151	1	1	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0021	1150	1	1	0	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP4C_chr8_81727448_81764515	0/0	t0022	1151	1	0	1	0	0	0	copy fasta	CHMP4C	chr8	81727448	81764515
CHMP5_chr9_33260049_33287070	1/1	t0001	1242	296	63	53	147	6	25	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0002	1242	20	19	0	0	0	1	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0003	1242	4	0	0	4	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0004	1242	3	3	0	0	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0005	1242	2	0	0	2	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0006	1242	1	1	0	0	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0007	1242	1	0	1	0	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP5_chr9_33260049_33287070	0/0	t0008	1242	1	0	0	1	0	0	copy fasta	CHMP5	chr9	33260049	33287070
CHMP6_chr17_80986841_81005133	1/0	t0001	1059	137	5	14	91	8	18	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/1	t0002	1059	103	8	18	58	3	15	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0003	1059	92	33	25	22	7	5	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0004	1059	28	0	14	13	0	1	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0005	1059	17	17	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0006	1059	12	10	2	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0007	1059	8	0	0	8	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0008	1059	5	3	2	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0009	1059	4	4	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0010	1059	3	3	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0011	1059	3	0	0	3	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0012	1059	2	2	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0013	1059	2	0	1	0	0	1	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0014	1059	2	0	1	0	0	1	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0015	1059	2	0	0	2	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0016	1059	2	0	0	2	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0017	1059	2	2	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0018	1059	2	0	0	2	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0019	1059	1	1	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0020	1059	1	0	1	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0021	1059	1	0	0	0	0	1	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0022	1059	1	0	0	1	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0023	1059	1	0	1	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0024	1059	1	0	0	1	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0025	1059	1	1	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0026	1059	1	1	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0027	1059	1	0	1	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133