JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHMP6_chr17_80986841_81005133	0/0	t0028	1059	1	1	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0029	1059	1	1	0	0	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP6_chr17_80986841_81005133	0/0	t0030	1059	1	0	0	1	0	0	copy fasta	CHMP6	chr17	80986841	81005133
CHMP7_chr8_23238637_23266999	0/0	t0001	2049	85	7	14	57	3	4	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0002	2046	73	6	5	58	1	3	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0003	2049	71	16	7	26	5	17	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	1/0	t0004	2049	59	33	6	18	0	1	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/1	t0005	2046	37	1	12	11	2	10	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0006	2047	14	1	5	1	2	5	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0007	2049	13	12	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0008	2046	11	2	5	1	0	3	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0009	2046	8	0	2	5	0	1	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0010	2046	5	5	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0011	2047	5	0	5	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0012	2046	5	0	0	5	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0013	2049	5	3	1	0	0	1	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0014	2050	5	0	5	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0015	2049	4	0	2	0	0	2	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0016	2049	4	0	0	4	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0017	2040	3	0	1	0	0	2	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0018	2044	3	1	2	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0019	2040	3	0	3	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0020	2046	3	0	0	3	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0021	2050	3	0	0	2	0	1	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0022	2049	2	2	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0023	2043	2	0	0	0	2	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0024	2046	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0025	2047	1	0	1	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0026	2046	1	0	1	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0027	2046	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0028	2043	1	0	0	0	1	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0029	2049	1	0	1	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0030	2049	1	1	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0031	2047	1	1	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0032	2049	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0033	2049	1	1	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0034	2049	1	1	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0035	2049	1	1	0	0	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0036	2049	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0037	2049	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHMP7_chr8_23238637_23266999	0/0	t0038	2049	1	0	0	1	0	0	copy fasta	CHMP7	chr8	23238637	23266999
CHM_chrX_85856180_86052558	1/1	t0001	3477	147	29	28	57	10	21	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0002	3477	32	4	6	17	3	2	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0003	3477	13	0	0	13	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0004	3478	6	5	1	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0005	3479	6	1	0	4	0	1	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0006	3478	6	6	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0007	3477	5	5	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0008	3477	5	4	1	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0009	3477	3	3	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558