JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHM_chrX_85856180_86052558	0/0	t0010	3476	3	0	0	3	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0011	3477	3	3	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0012	3480	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0013	3478	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0014	3477	2	2	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0015	3477	2	0	2	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0016	3478	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0017	3474	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0018	3477	1	0	0	0	0	1	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0019	3477	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0020	3478	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0021	3477	1	1	0	0	0	0	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0022	3477	1	0	0	0	0	1	copy fasta	CHM	chrX	85856180	86052558
CHM_chrX_85856180_86052558	0/0	t0023	3474	1	0	0	1	0	0	copy fasta	CHM	chrX	85856180	86052558
CHN1_chr2_174793809_175010381	1/1	t0001	1777	174	46	22	81	8	15	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0002	1773	31	10	4	11	1	5	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0003	1777	23	0	1	22	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0004	1777	14	14	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0005	1777	12	0	1	6	1	4	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0006	1777	9	9	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0007	1777	3	0	1	0	0	2	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0008	1777	2	0	1	0	0	1	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0009	1777	1	0	0	0	0	1	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0010	1777	1	0	0	1	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0011	1777	1	1	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0012	1777	1	1	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0013	1773	1	1	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0014	1773	1	0	0	1	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0015	1777	1	1	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN1_chr2_174793809_175010381	0/0	t0016	1777	1	1	0	0	0	0	copy fasta	CHN1	chr2	174793809	175010381
CHN2_chr7_29189775_29519328	0/0	t0001	1763	40	15	13	5	3	4	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0002	1763	33	17	4	10	0	2	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0003	1761	27	2	1	16	2	6	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0004	1763	24	0	4	17	1	2	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/1	t0005	1761	21	4	3	6	1	6	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0006	1761	16	6	8	0	0	2	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0007	1763	15	1	3	9	0	2	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0008	1761	10	0	8	0	1	1	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0009	1758	7	0	0	7	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0010	1763	7	6	1	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	1/0	t0011	1761	6	2	3	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0012	1761	6	4	2	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0013	1761	3	3	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0014	1761	3	3	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0015	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0016	1763	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0017	1763	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0018	1763	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0019	1763	1	0	0	0	0	1	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0020	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328