JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHN2_chr7_29189775_29519328	0/0	t0021	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0022	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0023	1763	1	0	0	1	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0024	1763	1	0	0	1	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0025	1763	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0026	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0027	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHN2_chr7_29189775_29519328	0/0	t0028	1761	1	1	0	0	0	0	copy fasta	CHN2	chr7	29189775	29519328
CHODL_chr21_18239833_18272370	1/0	t0001	1724	292	21	61	163	15	31	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0002	1726	32	24	3	5	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0003	1724	11	10	1	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/1	t0004	1726	9	2	2	0	1	3	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0005	1724	8	8	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0006	1728	7	2	3	1	0	1	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0007	1728	6	6	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0008	1724	4	3	1	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0009	1724	3	3	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0010	1728	3	0	0	0	0	3	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0011	1726	3	3	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0012	1724	2	2	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0013	1723	2	2	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0014	1728	2	0	2	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0015	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0016	1728	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0017	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0018	1723	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0019	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0020	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0021	1724	1	0	0	0	0	1	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0022	1724	1	0	0	1	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0023	1724	1	0	0	0	0	1	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0024	1723	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0025	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0026	1728	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0027	1724	1	0	0	1	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0028	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0029	1724	1	0	0	1	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0030	1724	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0031	1728	1	1	0	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHODL_chr21_18239833_18272370	0/0	t0032	1724	1	0	1	0	0	0	copy fasta	CHODL	chr21	18239833	18272370
CHORDC1_chr11_90195429_90228049	1/1	t0001	2072	176	49	35	70	6	14	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0002	2072	66	6	0	54	0	6	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0003	2074	65	2	12	41	3	7	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0004	2074	38	15	7	2	1	13	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0005	2073	13	0	3	3	3	4	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0006	2076	8	3	1	4	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0007	2072	7	0	6	0	1	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0008	2073	6	0	0	6	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0009	2072	6	6	0	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0010	2074	6	0	5	0	0	1	copy fasta	CHORDC1	chr11	90195429	90228049