Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAT2_chr6_143417832_143455695	0/0	t0015	5675	4	0	0	2	0	2	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0016	5677	4	4	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0017	5688	4	0	2	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0018	5707	3	1	0	1	1	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0019	5713	3	1	1	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0020	5678	3	3	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0021	5685	3	0	0	2	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0022	5676	3	0	2	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0023	5676	3	0	0	2	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0024	5685	3	0	1	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0025	5671	3	0	1	1	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0026	5690	3	0	3	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0027	5661	3	3	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0028	5705	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0029	5703	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0030	5703	2	0	1	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0031	5699	2	1	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0032	5699	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0033	5709	2	0	0	1	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0034	5675	2	2	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0035	5654	2	2	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0036	5676	2	2	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0037	5678	2	2	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0038	5682	2	2	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0039	5671	2	0	2	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0040	5677	2	0	2	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0041	5679	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0042	5681	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0043	5673	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0044	5689	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0045	5691	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0046	5673	2	0	0	1	1	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0047	5677	2	0	0	1	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0048	5685	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	1/0	t0049	5669	2	0	0	0	1	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0050	5671	2	0	0	2	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0051	5673	2	1	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0052	5692	2	0	1	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0053	5705	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0054	5671	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0055	5711	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0056	5707	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0057	5698	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0058	5718	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0059	5711	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0060	5715	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0061	5717	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0062	5720	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0063	5705	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0064	5707	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695