JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHORDC1_chr11_90195429_90228049	0/0	t0011	2072	4	4	0	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0012	2072	3	1	0	0	0	2	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0013	2072	3	2	0	0	0	1	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0014	2070	3	0	0	3	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0015	2072	1	0	0	1	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0016	2072	1	1	0	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0017	2074	1	1	0	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0018	2072	1	0	1	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0019	2072	1	0	0	1	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0020	2074	1	0	0	1	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0021	2074	1	0	1	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHORDC1_chr11_90195429_90228049	0/0	t0022	2072	1	0	1	0	0	0	copy fasta	CHORDC1	chr11	90195429	90228049
CHP1_chr15_41226268_41286887	1/0	t0001	2614	129	35	19	55	4	15	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/1	t0002	2615	40	2	11	15	1	10	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0003	2614	31	13	2	15	1	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0004	2614	12	11	0	0	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0005	2615	10	3	1	6	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0006	2617	10	0	4	1	1	4	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0007	2616	9	0	5	0	2	2	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0008	2613	8	2	2	3	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0009	2614	5	4	0	0	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0010	2615	4	4	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0011	2616	4	0	3	0	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0012	2613	4	4	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0013	2616	3	3	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0014	2614	3	3	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0015	2613	3	3	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0016	2616	2	0	1	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0017	2616	2	2	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0018	2617	2	2	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0019	2613	2	1	1	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0020	2614	1	0	0	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0021	2614	1	0	0	0	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0022	2615	1	0	0	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0023	2616	1	1	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0024	2616	1	0	0	0	1	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0025	2613	1	0	0	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0026	2613	1	0	0	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0027	2613	1	1	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0028	2614	1	0	0	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0029	2614	1	0	0	0	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0030	2615	1	0	1	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0031	2615	1	0	0	1	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0032	2616	1	1	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0033	2614	1	0	0	0	0	1	copy fasta	CHP1	chr15	41226268	41286887
CHP1_chr15_41226268_41286887	0/0	t0034	2614	1	1	0	0	0	0	copy fasta	CHP1	chr15	41226268	41286887
CHP2_chr16_23750026_23763935	1/1	t0001	1377	346	57	78	147	18	44	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0002	1377	20	18	2	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0003	1377	11	11	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0004	1377	4	4	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935