JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHP2_chr16_23750026_23763935	0/0	t0005	1377	3	2	1	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0006	1377	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0007	1377	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0008	1377	1	1	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0009	1377	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0010	1377	1	0	1	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0011	1377	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0012	1377	1	1	0	0	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHP2_chr16_23750026_23763935	0/0	t0013	1377	1	0	0	1	0	0	copy fasta	CHP2	chr16	23750026	23763935
CHPF2_chr7_151227483_151243822	0/0	t0001	1671	237	55	43	117	6	16	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	1/0	t0002	1671	92	16	16	31	5	23	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/1	t0003	1671	23	4	7	0	5	6	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0004	1671	6	6	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0005	1671	6	5	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0006	1671	4	3	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0007	1671	3	2	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0008	1671	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0009	1671	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0010	1671	1	0	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0011	1671	1	0	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0012	1671	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0013	1671	1	0	1	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0014	1671	1	0	0	0	0	1	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0015	1671	1	0	0	1	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0016	1671	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0017	1671	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF2_chr7_151227483_151243822	0/0	t0018	1671	1	1	0	0	0	0	copy fasta	CHPF2	chr7	151227483	151243822
CHPF_chr2_219533954_219548809	1/1	t0001	701	387	93	74	165	14	39	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0002	701	2	0	0	2	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0003	701	2	2	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0004	701	1	0	1	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0005	701	1	1	0	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0006	701	1	0	1	0	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0007	701	1	0	0	0	0	1	copy fasta	CHPF	chr2	219533954	219548809
CHPF_chr2_219533954_219548809	0/0	t0008	701	1	0	0	1	0	0	copy fasta	CHPF	chr2	219533954	219548809
CHPT1_chr12_101692640_101734074	1/1	t0001	352	355	83	68	162	11	29	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	t0002	352	27	5	2	12	3	5	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	t0003	352	9	0	0	9	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	t0004	352	5	0	0	5	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	t0005	352	2	0	0	2	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	t0006	352	2	0	0	2	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHPT1_chr12_101692640_101734074	0/0	t0007	352	2	2	0	0	0	0	copy fasta	CHPT1	chr12	101692640	101734074
CHRAC1_chr8_140506322_140522154	0/1	t0001	2084	255	26	51	133	12	32	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	1/0	t0002	2086	64	8	11	33	4	7	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0003	2084	27	27	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0004	2086	18	16	2	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0005	2083	10	0	2	6	0	2	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0006	2084	7	0	6	0	0	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0007	2084	7	7	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0008	2083	6	0	0	6	0	0	copy fasta	CHRAC1	chr8	140506322	140522154